PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.1G350600.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 399aa    MW: 40017.4 Da    PI: 5.4108
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.1G350600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.25.3e-12202247555
                         HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  Seita.1G350600.1.p 202 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 247
                         99***********************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.58E-17195256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.36E-13195251No hitNo description
PROSITE profilePS5088817.39197246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-16199256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-9202247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-13203252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MQPSGREMQG GGGGQDDFFD QMLSTLPTAW SELGSGKSPW ELPAGASEDP AAFDESALLA  60
SRLRHHQIGG DKPIMLHLSD LHGLAGGEDA GAAGFLPLPL FTDRAREDMD AAFKSPNAAG  120
GEQALYNGFG AAGMHGAAAA VQPPFGQGGS MPAQSFGGGA AAGGGGSAPT GAPAAGAPSG  180
GGAAPPRQQR VRARRGQATD PHSIAERLRR ERIAERMKAL QELVPNANKT DKASMLDEII  240
DYVKFLQLQV KVLSMSRLGG AAGVGPLVAN MSSEGNGNGN GTSDSGDGNA ANGGNNGENG  300
GSSLKVTEQQ VARLMEEDMG TAMQYLQGKG LCLMPISLAS AISSATSSSL LSRPSIGSMG  360
GARGLGHEGS NPASPPLMNG AGGDDSRTGK DAGAGSKQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1206211RLRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004954215.10.0PREDICTED: transcription factor bHLH82-like
SwissprotQ9ZUG91e-75BH066_ARATH; Transcription factor bHLH66
TrEMBLK3YTF80.0K3YTF8_SETIT; Uncharacterized protein
STRINGSi017553m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141937118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.12e-34LJRHL1-like 1